About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6436890_6436972_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6436890 - 6436972
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTGATTAATC
Flanking Amino Acid:
INKLLDMAAQIAEGMAFIEA
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.5
0.6
0.8
69.9
30.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
52.4
0.06
2
65.72
40.2

Associated Gene:

Gene:
LCK
Ensembl Gene ID:
ENSAPLG00000013851
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014461
6434659 - 6439641
4983