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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6439065_6439181_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6439065 - 6439181
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
CGTGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
GGACACTCAGGT
Flanking Amino Acid:
QKGEKLRVLEESGEWWRAQS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.1
53
40.4
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
76.7
0.6
0.9
69.4
36.8
Minor 5ss
31.5
-2.1
3.3
33.8
43
Minor BPS
38.5
-0.7
2
49.99
42.5

Associated Gene:

Gene:
LCK
Ensembl Gene ID:
ENSAPLG00000013851
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014461
6434659 - 6439641
4983