Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6446356_6446548_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6446356 - 6446548

Intron Length:

193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCGTGCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TGGGTGTTGACC

Flanking Amino Acid:

LIRNVDAVEKRVQNLGWYQP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

74.8

38.1

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

0.4

0.9

64.4

36.6

Minor 5ss

-1.5

3.2

48.2

47.9

Minor BPS

46.5

-0.2

2.1

57.24

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022183

6446159 - 6449458

3300

ENSAPLT00000042923

6446090 - 6449458

3369