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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6447027_6447310_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6447027 - 6447310
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAC
U12 Branch Point Sequence:
CGTGCCCCAGCT
Flanking Amino Acid:
ECLNIASSIEALSSVDSVMM
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
44.9
-0.3
1.4
52.1
43.1
Major PPT
70.8
0.47
0.9
61.1
40.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
43.2
-0.4
2.1
61.84
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013832
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014413
6446159 - 6449458
3300
ENSAPLT00000042923
6446090 - 6449458
3369
ENSAPLT00000022183
6446159 - 6449458
3300