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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6447437_6447533_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6447437 - 6447533
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
CTGCCCCCATCC
Flanking Amino Acid:
EQYFQKIAAQTNQWRLSDLN
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
74.6
0.55
0.8
65.7
36
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
42.6
-0.5
2
52.9
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013832
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042923
6446090 - 6449458
3369
ENSAPLT00000022183
6446159 - 6449458
3300
ENSAPLT00000014413
6446159 - 6449458
3300