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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6448293_6448402_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6448293 - 6448402
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGG
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
AGCGCCCTGATT
Flanking Amino Acid:
TACLAAQCLDREEASVLVHG
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
60.1
42.1
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
27.2
-2.6
3.7
37.3
47.4
Minor BPS
48.2
-0
1.8
62.58
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013832
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022183
6446159 - 6449458
3300
ENSAPLT00000014413
6446159 - 6449458
3300
ENSAPLT00000042923
6446090 - 6449458
3369