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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6448847_6449000_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6448847 - 6449000
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GACGCTCCCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCGAC
U12 Branch Point Sequence:
CGCCTCTCGACG
Flanking Amino Acid:
GTFLCNNEKERCLCKVKENT
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.9
88.4
21.6
Major BPS
51.3
0.03
1.3
52.1
43.1
Major PPT
58.1
0.18
0.9
50.9
33.7
Minor 5ss
19.6
-3.5
3.7
32.2
42.5
Minor BPS
45.7
-0.4
1.6
44.42
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013832
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042923
6446090 - 6449458
3369
ENSAPLT00000022183
6446159 - 6449458
3300
ENSAPLT00000014413
6446159 - 6449458
3300