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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6450859_6451187_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6450859 - 6451187
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTTCTCATCT
Flanking Amino Acid:
NSVAFHPDGKSYSSGGEDGY
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.5
0.66
0.8
73.6
30.4
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
55.6
0.26
1.8
74.07
42.9

Associated Gene:

Gene:
EIF3I
Ensembl Gene ID:
ENSAPLG00000013429
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014037
6450777 - 6458343
7567