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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6452669_6452769_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6452669 - 6452769
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGAAT
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCCT
U12 Branch Point Sequence:
CCTTCCTTCCTT
Flanking Amino Acid:
FFDLRDPSQIENNEPYMKIP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.1
36.3
Major BPS
30.5
-1.2
4.2
65.3
43.7
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
29
-2.4
3.2
40.3
45.6
Minor BPS
42.8
-0.4
3.6
70.75
46.9

Associated Gene:

Gene:
EIF3I
Ensembl Gene ID:
ENSAPLG00000013429
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014037
6450777 - 6458343
7567