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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6453282_6453855_R

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
6453282 - 6453855
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCTTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTGGTGACCTAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAACT
Flanking Amino Acid:
TGAVWCVDADWDTRHVLTGS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.3
64.8
41.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
52.8
0.06
1
43.3
42
Minor 5ss
87.3
1.25
1.3
93.7
19.8
Minor BPS
94.1
1.47
0.7
101.2
24.9

Associated Gene:

Gene:
EIF3I
Ensembl Gene ID:
ENSAPLG00000013429
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014037
6450777 - 6458343
7567