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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6453944_6454058_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6453944 - 6454058
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
GAGGCCTGCATG
Flanking Amino Acid:
DLLFTVAKDPIVNVWYSVNG
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
63.5
42.9
Major BPS
50.1
0
1.4
63
43.2
Major PPT
77.4
0.62
0.7
69.3
31.4
Minor 5ss
32.7
-2
3.3
44.7
43.5
Minor BPS
42.2
-0.7
2
41.88
43

Associated Gene:

Gene:
EIF3I
Ensembl Gene ID:
ENSAPLG00000013429
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014037
6450777 - 6458343
7567