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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6455627_6455761_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6455627 - 6455761
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGTCTTGTAACA
Flanking Amino Acid:
LLFYLTLASADLSLAVPLCN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
38.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
80.5
0.69
0.9
77.2
36
Minor 5ss
37.3
-1.4
2.8
50.6
45.6
Minor BPS
53
0.09
2
68.82
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013425
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013975
6454993 - 6456376
1384