Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6455855_6456314_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6455855 - 6456314

Intron Length:

460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCAAAAT

U12 Branch Point Sequence:

GCTGTAGGAACA

Flanking Amino Acid:

RMLGEDIGGKRAVAGMVLTL

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

26.4

Major BPS

46.1

-0.2

1.3

49.6

40.9

Major PPT

89.7

0.89

0.7

84.7

30.1

Minor 5ss

36.8

-1.5

2.9

43.7

38.1

Minor BPS

39.2

-0.8

2.2

49.33

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013975

6454993 - 6456376

1384