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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6460539_6464805_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6460539 - 6464805
Intron Length:
4267

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGTGAGGA
5'SS Class:
major
3'SS Sequence:
ATGAGCTCCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GGGGCTTTGACC
Flanking Amino Acid:
LAGGLTLAPPAKK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
52
41.8
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
46.3
-0.2
1.7
46.5
40.9
Minor 5ss
19.7
-3.5
3.8
20.1
37.8
Minor BPS
55.7
0.16
1.4
58.68
40.8

Associated Gene:

Gene:
DCDC2B
Ensembl Gene ID:
ENSAPLG00000002043
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002038
6454524 - 6464815
10292