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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6461879_6462121_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6461879 - 6462121
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATTGTTAACA
Flanking Amino Acid:
LQQAIVSRKNYLKLKQRLGT
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
68.8
38
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
31.9
-2.1
3.5
41.5
38.6
Minor BPS
61.5
0.36
2
73.06
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023599
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032965
6460887 - 6464716
3830