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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6462241_6462454_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6462241 - 6462454
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGAC
5'SS Class:
major
3'SS Sequence:
CATTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
GTTTCTTCCATT
Flanking Amino Acid:
HESESLEACLEIPLEDIKEL
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.4
38.4
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
83.2
0.75
0.8
77.4
30.9
Minor 5ss
29.1
-2.4
3.5
32.4
42.7
Minor BPS
53.9
0.2
2
76.63
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023599
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032965
6460887 - 6464716
3830