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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6468880_6469427_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6468880 - 6469427
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GGAGCTGTAACC
Flanking Amino Acid:
KQQETHLKQQLALYTEKFEE
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
47.3
-0.2
2.1
56.41
42

Associated Gene:

Gene:
TXLNA
Ensembl Gene ID:
ENSAPLG00000013293
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013853
6466819 - 6473605
6787