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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6469922_6470073_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6469922 - 6470073
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
GTTCCCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTGTCAGTGACT
Flanking Amino Acid:
LIEQYELREEHIEKVFKHKD
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
73.2
0.52
1
69.2
36.9
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
48.9
-0
2.3
73.11
43.7

Associated Gene:

Gene:
TXLNA
Ensembl Gene ID:
ENSAPLG00000013293
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013853
6466819 - 6473605
6787