About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6475583_6476560_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6475583 - 6476560
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGCATTTCACT
Flanking Amino Acid:
PYCSLIEEAYGLDKIEFLQS
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
41.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.7
0.62
0.9
83.1
25.7
Minor 5ss
40.7
-1
3.2
55
44.5
Minor BPS
51.4
0.12
2
74.11
42.8

Associated Gene:

Gene:
KPNA6
Ensembl Gene ID:
ENSAPLG00000012365
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012934
6474398 - 6484364
9967