About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6481312_6481537_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6481312 - 6481537
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
AATGCTAAAACT
Flanking Amino Acid:
NSDFEDVQEQAVWALGNIAG
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
47.7
-0
2
68.2
42.7

Associated Gene:

Gene:
KPNA6
Ensembl Gene ID:
ENSAPLG00000012365
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012934
6474398 - 6484364
9967