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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6481670_6482615_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6481670 - 6482615
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
CTACTCGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTCACA
Flanking Amino Acid:
LKRSENCTLQFEAAWALTNI
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
72.9
37.2
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
56.7
0.2
2
74.51
36.9

Associated Gene:

Gene:
KPNA6
Ensembl Gene ID:
ENSAPLG00000012365
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012934
6474398 - 6484364
9967