Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6493173_6495245_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6493173 - 6495245

Intron Length:

2073

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTG|GCAGGACAC

5'SS Class:

major

3'SS Sequence:

GTCCAGGGCCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TCTCCCTCATCA

Flanking Amino Acid:

PGPVSASQRPDMSSQETPQA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.2

58.9

42.4

Major BPS

0.5

1.1

71.2

35.2

Major PPT

52.1

0.05

1.1

41.5

42.8

Minor 5ss

20.7

-3.4

3.9

29.5

37.3

Minor BPS

55.7

0.17

1.9

69.27

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028507

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042696

6492855 - 6495456

2602