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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6494080_6494479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6494080 - 6494479
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
TGTGAGTAAATT
Flanking Amino Acid:
KIIDKKEGPEEFIQRFLPRE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
72.7
0.51
0.9
68.7
31.7
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
43
-0.4
2.4
65.08
45.7

Associated Gene:

Gene:
TSSK3
Ensembl Gene ID:
ENSAPLG00000012262
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012762
6493935 - 6495141
1207