About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6498296_6498783_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6498296 - 6498783
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TTGTGCTTACAG
Flanking Amino Acid:
KSTPSNNGKKGSSTDISEDW
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
83.3
0.75
0.9
76.5
37.7
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
48.5
-0.2
2.2
60.18
47.4

Associated Gene:

Gene:
BSDC1
Ensembl Gene ID:
ENSAPLG00000012066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012573
6497588 - 6502433
4846