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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6500788_6500888_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6500788 - 6500888
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTCTCCTCTCTC
Flanking Amino Acid:
GTTEPYDSAKARLYSLQSDP
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
38.9
-0.8
3.6
62.46
43.5

Associated Gene:

Gene:
BSDC1
Ensembl Gene ID:
ENSAPLG00000012066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012573
6497588 - 6502433
4846