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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6501060_6501613_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6501060 - 6501613
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TGTTACTTACGC
Flanking Amino Acid:
TASVVKDKLARAEGSSGATE
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.8
0.54
1
71.7
33.2
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
51
0.01
2.1
68.03
43.3

Associated Gene:

Gene:
BSDC1
Ensembl Gene ID:
ENSAPLG00000012066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012573
6497588 - 6502433
4846