Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6501731_6502119_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6501731 - 6502119

Intron Length:

389

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGGC

5'SS Class:

major

3'SS Sequence:

CATCTTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

AGTCTGTCATCT

Flanking Amino Acid:

QQSFQAVRDKSSEALEFMKR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

65.7

Major BPS

72.5

0.56

1.2

39.9

Major PPT

82.7

0.74

0.8

76.8

31.4

Minor 5ss

28.5

-2.5

3.6

41.2

45.5

Minor BPS

41.4

-0.5

2.3

60.63

42.7

Associated Gene:

Gene:

BSDC1

Ensembl Gene ID:

ENSAPLG00000012066

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012573

6497588 - 6502433

4846