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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6502181_6502422_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6502181 - 6502422
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TCTTCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
CCCCCCTTGACT
Flanking Amino Acid:
MADGEEAGWWRGW
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
73.8
0.53
0.9
70
30.9
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
66.7
0.61
1.3
72.42
44.8

Associated Gene:

Gene:
BSDC1
Ensembl Gene ID:
ENSAPLG00000012066
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012573
6497588 - 6502433
4846