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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6520206_6520839_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6520206 - 6520839
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTTGGCTG
5'SS Class:
weak_major
3'SS Sequence:
TATTTCCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
YGQGSDVISRNDLPRMRFKC
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.4
52.7
44.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.9
74.4
34.8
Minor 5ss
28.2
-2.5
4.1
39.8
40.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ZBTB8A
Ensembl Gene ID:
ENSAPLG00000011929
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012417
6519392 - 6521745
2354