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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6521010_6521412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6521010 - 6521412
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TCAATTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATTTCAATT
Flanking Amino Acid:
LDHLSSHFRTIHQACKPICR
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.6
0.6
0.9
68.8
41.6
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
55.8
0.26
1.5
71.94
39.8

Associated Gene:

Gene:
ZBTB8A
Ensembl Gene ID:
ENSAPLG00000011929
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012417
6519392 - 6521745
2354