About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6535457_6535822_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6535457 - 6535822
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTCTTTTTCATT
Flanking Amino Acid:
EEFSLQKHPQGTEVKAITYS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
78.8
34.4
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
54.7
0.23
1.7
71.21
40.9

Associated Gene:

Gene:
ZBTB8OS
Ensembl Gene ID:
ENSAPLG00000011812
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012316
6535370 - 6539035
3666