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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6536940_6537508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6536940 - 6537508
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTGTCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTGTTACAG
Flanking Amino Acid:
YEYLDHTADVQLHAWGDTLE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
0.8
74.4
36.5
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
45.1
-0.5
2.3
56.73
44.7

Associated Gene:

Gene:
ZBTB8OS
Ensembl Gene ID:
ENSAPLG00000011812
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012316
6535370 - 6539035
3666