Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6540558_6541075_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6540558 - 6541075

Intron Length:

518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGCCC

5'SS Class:

major

3'SS Sequence:

AAAAAATTAGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

GCTTTCTTAAAA

Flanking Amino Acid:

MADKEAFDDAVEERV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

63.1

39.8

Major BPS

82.2

0.8

71.9

35.8

Major PPT

53.4

0.08

1.1

45.5

44.5

Minor 5ss

30.9

-2.2

3.4

42.7

44.4

Minor BPS

70.1

0.63

1.4

72.99

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029035

6540542 - 6547540

6999