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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6544841_6544947_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6544841 - 6544947
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
GTGTCTTTGACT
Flanking Amino Acid:
FILATGSADKTVALWDLRNL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
67.6
0.4
1
62.9
43
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
75.6
0.89
1.1
83.64
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011390
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029035
6540542 - 6547540
6999
ENSAPLT00000011927
6541045 - 6547540
6496