Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6545026_6546148_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6545026 - 6546148

Intron Length:

1123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAACAA

5'SS Class:

major

3'SS Sequence:

TCCTTGTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GCTTTCTAAATT

Flanking Amino Acid:

FESHKDEIFQVQWSPHNETI

Intron Amino Acid Position:

327

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

61.3

39.2

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.6

0.62

0.8

72.9

Minor 5ss

29.6

-2.3

3.3

38.7

46.3

Minor BPS

62.7

0.48

1.7

75.64

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011390

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029035

6540542 - 6547540

6999

ENSAPLT00000011927

6541045 - 6547540

6496