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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6546226_6546329_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6546226 - 6546329
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTCTTAAAG
Flanking Amino Acid:
TDRRLNVWDLSKIGEEQSPE
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
72.1
37.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.5
0.71
0.9
82.7
26.4
Minor 5ss
34.8
-1.7
2.9
45.4
42.6
Minor BPS
70.4
0.5
1.4
74.05
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011390
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029035
6540542 - 6547540
6999
ENSAPLT00000011927
6541045 - 6547540
6496