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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6553362_6554425_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6553362 - 6554425

Intron Length:

1064

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGACAT

U12 Branch Point Sequence:

CTCTCCTTTACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

72.5

37.3

Major BPS

55.3

0.13

1.3

64.4

41.8

Major PPT

85.1

0.79

0.7

79.2

26.4

Minor 5ss

31.7

-2.1

3.6

47.8

47.9

Minor BPS

69.8

0.62

1.7

75.21

42.3

Associated Gene:

Gene:

SYNC

Ensembl Gene ID:

ENSAPLG00000021934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038500

6549540 - 6554583

5044

ENSAPLT00000019592

6550311 - 6554583

4273