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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6580946_6581178_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6580946 - 6581178
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
AGGTCTCTGATG
Flanking Amino Acid:
AAPGTEPPAQDRRGETA*
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
79
0.72
1
69
38.9
Major PPT
80.8
0.69
0.8
77
31.7
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
47.3
-0.3
1.7
49.66
38.6

Associated Gene:

Gene:
KIAA1522
Ensembl Gene ID:
ENSAPLG00000029185
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025968
6559454 - 6582201
22748