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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6582972_6583109_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6582972 - 6583109
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGACCCTTGTCC
Flanking Amino Acid:
PKKKVFEKLQADFRVSEDCV
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
86
0.81
0.8
77.8
36.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
44.5
-0.4
3.4
65.17
40.2

Associated Gene:

Gene:
YARS1
Ensembl Gene ID:
ENSAPLG00000005739
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005972
6582861 - 6586771
3911