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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6583252_6583334_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6583252 - 6583334
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
TTTTGCTTCCTT
Flanking Amino Acid:
ESQGMVLCASSLGEPRQVEP
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
82.8
0.74
0.8
76.6
32
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
41.7
-0.5
3.8
79.08
43.9

Associated Gene:

Gene:
YARS1
Ensembl Gene ID:
ENSAPLG00000005739
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005972
6582861 - 6586771
3911