About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6585978_6586156_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6585978 - 6586156
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGGTGCTGACAG
Flanking Amino Acid:
FVRGTDYQLSKEYTLDVYRL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
76.6
0.6
0.7
68.8
31.7
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
41.2
-0.8
2.1
46.17
45.9

Associated Gene:

Gene:
YARS1
Ensembl Gene ID:
ENSAPLG00000005739
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005972
6582861 - 6586771
3911