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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6586570_6586714_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6586570 - 6586714
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
GGTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTAGGAC
U12 Branch Point Sequence:
CCGTGTAGGACG
Flanking Amino Acid:
KYQLITRNLQEVLGEDKLSA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
42.9
-0.4
1.5
37.2
42.1
Major PPT
69.5
0.44
0.9
62.3
34.7
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
36.7
-1.1
2
35.06
40.5

Associated Gene:

Gene:
YARS1
Ensembl Gene ID:
ENSAPLG00000005739
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005972
6582861 - 6586771
3911