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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6602357_6603131_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6602357 - 6603131
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTCTTCATTT
Flanking Amino Acid:
HQGGGLLRSKFPKNKPSVNI
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.3
0.7
0.7
73.2
31.7
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
55.8
0.26
1.8
75.55
42.1

Associated Gene:

Gene:
FNDC5
Ensembl Gene ID:
ENSAPLG00000006265
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006495
6602315 - 6608494
6180