Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6623485_6624000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6623485 - 6624000

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGCACG

5'SS Class:

major

3'SS Sequence:

CTCCCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCCCAC

U12 Branch Point Sequence:

AGGCGCCCACCC

Flanking Amino Acid:

SREEMLEIVQAIDKMVSVMN

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

66.5

44.9

Major BPS

-0.3

1.2

47.5

37.7

Major PPT

76.5

0.6

0.7

68.3

31.9

Minor 5ss

38.6

-1.3

49.6

46.4

Minor BPS

34.5

-1.2

2.1

40.15

38.8

Associated Gene:

Gene:

HPCA

Ensembl Gene ID:

ENSAPLG00000006276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006500

6623107 - 6624439

1333