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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6624104_6624341_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6624104 - 6624341
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATGAG
5'SS Class:
major
3'SS Sequence:
GTCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGCCAT
U12 Branch Point Sequence:
CCGCGCTGAGCC
Flanking Amino Acid:
IFRQMDTDNDGKLSLEEFII
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
66
39.9
Major BPS
44.7
-0.3
1.5
50.2
45.2
Major PPT
73.3
0.52
0.8
65.8
30.2
Minor 5ss
31.9
-2.1
3.3
40.3
45.9
Minor BPS
40.8
-0.7
2
44.23
43.7

Associated Gene:

Gene:
HPCA
Ensembl Gene ID:
ENSAPLG00000006276
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006500
6623107 - 6624439
1333