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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6625687_6625924_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6625687 - 6625924
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACCGGGG
5'SS Class:
weak_major
3'SS Sequence:
TGCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTCGAT
U12 Branch Point Sequence:
CTGTCGATGACC
Flanking Amino Acid:
NTASAIAALLTISCGLSALM
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.3
42.5
44.7
Major BPS
58.6
0.21
1.4
58.2
48.3
Major PPT
82.9
0.74
0.8
77
31.7
Minor 5ss
33.2
-1.9
3.7
43.7
45.9
Minor BPS
47
-0.2
2.3
62.35
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028668
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018145
6624618 - 6626509
1892