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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6631326_6631728_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6631326 - 6631728
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
CCCTTCCATAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTTCCATAAAG
Flanking Amino Acid:
MKEISDLHYLSPSGCTFWGK
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
63.1
0.3
1
63.1
31
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
55.7
0.04
1.9
61.5
45.9

Associated Gene:

Gene:
RNF19B
Ensembl Gene ID:
ENSAPLG00000006334
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006576
6627431 - 6638559
11129