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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6633482_6638118_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6633482 - 6638118
Intron Length:
4637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTCTTGCTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
49.7
-0
2.3
70.31
41.4

Associated Gene:

Gene:
RNF19B
Ensembl Gene ID:
ENSAPLG00000006334
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006576
6627431 - 6638559
11129