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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6658517_6660432_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6658517 - 6660432
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAAGACC
5'SS Class:
major
3'SS Sequence:
CCATTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTCCCATTTATT
Flanking Amino Acid:
SILAAFSKATSE*
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
65.8
37.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
78.1
0.63
0.9
69.6
40.2
Minor 5ss
35.3
-1.7
3.3
48.5
40.8
Minor BPS
52.9
0.17
1.9
74.83
41.7

Associated Gene:

Gene:
AK2
Ensembl Gene ID:
ENSAPLG00000006769
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007041
6657692 - 6664761
7070