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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6662013_6662112_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6662013 - 6662112
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTGAG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCCCCTCTGACT
Flanking Amino Acid:
FPRTVKQAEMLDELLEKRRE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
61.3
39.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
88
0.85
0.7
84.9
29.9
Minor 5ss
25.7
-2.8
3.1
27.4
39.1
Minor BPS
48.4
-0
1.7
61.93
42.2

Associated Gene:

Gene:
AK2
Ensembl Gene ID:
ENSAPLG00000006769
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007041
6657692 - 6664761
7070